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mRNA Translation (Advanced)

DNA Learning Center

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  • Recommended by 4 people, in Hacker News, across 7 different months.

Assumes interest and some biology. Education, not medical advice.

1.5M views16 years ago4 recommendations

How the body worksCells and moleculesGenetics and genomics

An animation showing how ribosomes translate messenger RNA into three-dimensional proteins essential for life.

The job of the mRNA is to carry the gene's message from the DNA out of the nucleus to a ribosome for production of the particular protein that this gene codes for. Originally created for DNA Interactive ( dnai.org ). TRANSCRIPT: The job of this mRNA is to carry the genes message from the DNA out of the nuceus to a ribosome for production of the particular protein that this gene codes for. There can be several million ribosomes in a typical eukaryotic cell these complex catalytic machines use the mrna copy of the genetic information to assemble amino acid building blokes into the three dimensional proteins that are essential for life. Lets see how it works. The ribosome is composed of one large and one small sub-unit that assemble around the messenger RNA, which then passes through the ribosome like a computer tape. The amino acid building blocks (that's the small glowing red molecules) are carried into the ribosome attached to specific transfer RNAs. That's the larger green molecules also referred to as tRNA. The small sub-unit of the ribosome positions the mRNA so that it can be read in groups of three letters known as a codon. Each codon on the mRNA matches a corresponding anti-codon on the base of a transfer RNA molecule.The larger sub-unit of the ribosome removes each amino acid and join it onto the growing protein chain. As the mRNA is ratcheted through the ribosome, the mRNA sequence is translated into an amino acid sequence. There are three locations inside the ribosome, designated the A-site, the P-site and the E-site. The addition of each amino acid is a three step cycle: First, the tRNA enters the ribosome at the A-site and is tested for a codon/anti-codon match with the mRNA. Next, provided there is a correct match, the tRNA is shifted to the P-site and the amino acid it carries is added to the end of the amino acid chain. The mRNA is also ratcheted on three nucleotides or one codon. Thirdly, the spent tRNA is moved to the E-site and then ejected from the ribosome to be recycled. As the protein synthesis proceeds, the finished chain emerges from the ribosome. It folds up into a precise shape, determined by the exact order of amino acids. Thus the Central Dogma explains how the four letter DNA code is - quite literally - turned into flesh and blood.

Why it's here

4 people recommend this, 1 disputes it

What people say. Highly recommended for its clear and mind-blowing visualization of the molecular process of protein translation.

ambrop7in Hacker News • Recommends

On “Influenza A (H1N1) – How many bits does it take to kill a human? (2009)”

The RNA->protein translation process is pretty awesome. Here's a very informative video: link to this video Also Wikipedia page on the ribosome has a good description if you're patient enough to read through.

magicalhippoin Hacker News • Recommends

On “Face transplant recipient’s donor face now failing”

Indeed. I had read about it before but viewing these visualizations blew my mind: link (DNA transcription) link to this video (mRNA translation) link (DNA replication)

jcimsin Hacker News • Recommends

On “What is protein folding? A brief explanation”

Apologies if I spam this stuff too much but I'm so intrigued by the dynamic complexity of this whole thing. The following three videos describe the process of DNA Transcription (copying a single gene's worth of RNA from the DNA strand), Translation (subject of TFA, creation of the protein from that RNA), and Replication (the process of making a complete copy of DNA for purposes of cell division. Keep in mind that the functional components you see in here are themselves (generally) proteins that are created (and have evolved) by a similar process. Transcription - link Translation - link to this video Replication - link

jcimsin Hacker News • Recommends

On “18.7 Million Americans Vaccinated”

It’s broader than that actually, this is a generalized protein factory. This is how mRNA is created by the cells in your body to create the proteins needed to keep you alive (aka transcription): link This is how mRNA is then used to create proteins, either from strands manufactured by your own cells, those coming from viruses that have infected your body, or from mRNA vaccines (aka translation): link to this video Not directly related, but here is an amazing video showing how HIV infection works, including parts you will now recognize from the above: link

shadowofneptunein Hacker News • Recommends

On “Moderna mRNA sequence released to GitHub [pdf]”

These might interest you then: 3d visualizations of cellular processes in real time. I was shown them in my intro to biology class, which filled me with the same interest. Transcriptase: link DNA polymerase: link The Ribosome: link to this video

jcimsin Hacker News • Recommends

On “DNA seen through the eyes of a coder”

Some amazing animations that show some of the primary operations related to DNA: Transcription (copying sections of DNA into RNA) - link Translation (turning messenger RNA into proteins) - link to this video RNA Splicing (removing non-coding sections of mRNA) - link DNA Wrapping & Replication(two part video) - link One thing I would encourage folks to do as you listen to the narration of these is to consider any time words are used that imply agency and remember that these are basically blobs of magnets in a jostling goo. You'll find the names Drew Berry and WEHI referenced in most of these. There are many more stunning and IMHO profoundly informative examples of biological machinery from them on…

jcimsin Hacker News • Recommends

On “NASA: Mystery of Life's Handedness Deepens”

Only tangentially related, but because they are so amazing here are a few videos that illustrate the process of transcription (creating mRNA from DNA) and translation (creating a protein from mRNA). link link to this video The common complaint with these videos is that everything is more complex. One thing that isn't evident is that these specific videos (built mostly by Drew Barry) actually model a lot of other molecules to create a more realistic physical environment with brownian motion and whatnot. Then the irrelevant molecules are simply made transparent in the rendering. Obviously it's still much much more complex (eg the constant stream of ATP used to drive many of these operations is not illu…

modelessin Hacker News • Disputes

On “Cells are fast and crowded places (2011)”

It always bothered me that in the standard explanations of how these processes work it always seemed that reaction ingredients would somehow magically seek each other out, such as in videos like this where the amino acids arrive at the ribosome in order: link to this video The molecules really do move randomly, not magically, and it's just that they go so fast and are so numerous and collide so often that even random chance puts the right molecules in the right place many times per second. This article was a revelation when I first read it and I'm quite disappointed that this was never explained properly in my entire school life.

dm2in Hacker News • Mentions

On “Thanks, HN: You helped discover a disease and save lives”

…too many errors in your body, else it leads to cancer and other horrible things. Lots of mice have given their lives to ensure that we and our children live awesome healthy lives. Thank you lab-rats (and other animals), you have suffered for our benefit (though you didn't have much of a choice). Also, it's really really difficult and really tiny, link to this video but there are several teams working on it and many other approaches.…

zappo2938in Hacker News • Mentions

On “Are only poets safe from robots?”

I wonder what T.S.Eliot would say about a robot winning a prize named after him? "Poetry is not a turning loose of emotion, but an escape from emotion; it is not the expression of personality, but an escape from personality. But, of course, only those who have personality and emotions know what it means to want to escape from these things."1 -- T.S. Eliot from 'Tradition and the Infividual Talent' In this essay, Eliot uses the metaphor of chemistry to describe the poetic process. However, I think using the metaphor of the chemical process inside the ribosome is a better analogy. The poet's mind takes a finite amount of emotions and feelings as there are a finite amount of condons which can…

jcimsin Hacker News • Mentions

On “The Timing of Evolutionary Transitions Suggests Intelligent Life Is Rare”

>On the other hand, the ribosome is an amazingly complex machine Just a bit: Transcription - link Translation - link to this video Replication - link It's not clear to me how much these features can be degraded without destroying the ability for organisms to reproduce with heritable traits. Also, when listening to these videos, ask yourself 'how' and 'why' any time an action is described. For example, the following parenthetical questions from a small chunk of the 'Translation' video: "The addition of each amino acid is a three-step cycle; (Why three step?) First the tRNA enters the ribosome at the A-Site (Why does it only enter at the A-Site? How are other options prevented and/or made inconsequen…

zappo2938in Hacker News • Mentions

On “Moderna mRNA sequence released to GitHub [pdf]”

Wow Looks like it is analogous to having a header on a TCP packet. 0 Here is an animation of mRNA encoding translated to proteins inside a ribosome. 1 "The ribosome is composed of one large and one small sub unit that assemble around the messenger RNA, which then passes through the ribosome like a computer tape. The amino acid building blocks, that's the small glowing red molecules, are carried into the ribosome attached to specific transfer RNAs; that's the larger green molecules also referred to as tRNA. The small sub unit of the ribosome positions the mRNA so that it can be read in groups of three letters known as a codon." Very analogous indeed. 0 link 1 link to this video

jcimsin Hacker News • Mentions

On “Moderna mRNA sequence released to GitHub [pdf]”

This is a great animation of the life cycle of an HIV virus. It’s not exactly what happens with the pandemic virus but it gives you a good idea of the complexity of the process of viral reproduction (vaccine or immune response isn’t covered here): link Animation of transcription from mRNA: link to this video

timschmidtin Hacker News • Mentions

On “MusiCoT, a chain-of-thought (CoT) prompting technique for music generation [pdf]”

Like I said man, whatever helps you sleep at night. Even if it's a straw man like an unreferenced assertion about unnamed people in the 18th century. p.s. which part is the clockwork? the ticker tape with the encoded data, or the part that reads it? whole thing?: link to this video edit: Probably none of those since rhibosomes were discovered in the 1950s it seems.